The population of oomycetes in a recycled irrigation water system at a horticultural nursery in southern California.
Identifieur interne : 000024 ( Main/Exploration ); précédent : 000023; suivant : 000025The population of oomycetes in a recycled irrigation water system at a horticultural nursery in southern California.
Auteurs : Neelam R. Redekar [États-Unis] ; Tyler B. Bourret [États-Unis] ; Joyce L. Eberhart [États-Unis] ; Grant E. Johnson [États-Unis] ; Bruno J L. Pitton [États-Unis] ; Darren L. Haver [États-Unis] ; Lorence R. Oki [États-Unis] ; Jennifer L. Parke [États-Unis]Source :
- Water research [ 1879-2448 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical : Water.
- geographic : California.
- Phytophthora, Pythium, Recycling.
Abstract
Recapture and recycling of irrigation water is often required to meet enormous water demands at horticultural nurseries. We tested four water types associated with a recycled irrigation system at a commercial container nursery in southern California for presence of oomycete plant pathogens from July 2015 to December 2017. These water types included: the main source of water originating from a reservoir, retention water from an on-site collection pond, irrigation water received by different growing areas within the nursery, and irrigation runoff captured in polyethylene sheet-lined runoff channels. The genera Phytophthora, Pythium, and Phytopythium together contributed more than 85% of the total oomycete population detected in the recycled irrigation system. The Phytophthora and Pythium genera were represented by member species from nine (1-4, 6-10) and eight (A, B, D-F, H-J) different sub-generic clades, respectively. Incoming water sourced from the reservoir was found to harbor known plant pathogens such as Phytophthora citricola-complex, P. capsici-cluster, P. tropicalis,P citrophthora-cluster, P. nemorosa-cluster, P. riparia, P. cryptogea-complex, P. parsiana-cluster, P. sp. nov. aff. kernoviae, Pythium dissotocum-complex, Py. oligandrum-cluster, Py. irregulare, and Phytopythium litorale. Runoff water showed the highest oomycete species richness and frequency of detection with both filtration and leaf baiting methods. In addition to plant pathogens, oomycete fish pathogens such as Aphanomyces laevis, Pythium chondricola-complex, Pythium flevoense-complex, and Saprolegnia diclina-complex were also detected in greater abundance in the recycled irrigation water. The oomycete species richness in the runoff water was correlated with several environmental parameters such as soil temperature. Greater oomycete richness in incoming water was associated with higher soil temperatures, whereas richness in runoff declines with increasing soil temperature, likely suggesting connections to weather-dependent nursery operations.
DOI: 10.1016/j.watres.2020.116050
PubMed: 32629181
Affiliations:
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Redekar</name><affiliation wicri:level="1"><nlm:affiliation>Department of Crop and Soil Science, Oregon State University, Corvallis, OR, 97331, USA. Electronic address: neelam.redekar@nih.gov.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Crop and Soil Science, Oregon State University, Corvallis, OR, 97331</wicri:regionArea><wicri:noRegion>97331</wicri:noRegion></affiliation></author><author><name sortKey="Bourret, Tyler B" sort="Bourret, Tyler B" uniqKey="Bourret T" first="Tyler B" last="Bourret">Tyler B. Bourret</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, University of California, Davis, CA, 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, University of California, Davis, CA, 95616</wicri:regionArea><wicri:noRegion>95616</wicri:noRegion></affiliation></author><author><name sortKey="Eberhart, Joyce L" sort="Eberhart, Joyce L" uniqKey="Eberhart J" first="Joyce L" last="Eberhart">Joyce L. 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Johnson</name><affiliation wicri:level="1"><nlm:affiliation>University of California Cooperative Extension Orange County, South Coast Research and Extension Center, Irvine, CA, 92618, USA; Department of Plant Sciences, University of California, Davis, CA, 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>University of California Cooperative Extension Orange County, South Coast Research and Extension Center, Irvine, CA, 92618, USA; Department of Plant Sciences, University of California, Davis, CA, 95616</wicri:regionArea><wicri:noRegion>95616</wicri:noRegion></affiliation></author><author><name sortKey="Pitton, Bruno J L" sort="Pitton, Bruno J L" uniqKey="Pitton B" first="Bruno J L" last="Pitton">Bruno J L. 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Haver</name><affiliation wicri:level="1"><nlm:affiliation>University of California Cooperative Extension Orange County, South Coast Research and Extension Center, Irvine, CA, 92618, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>University of California Cooperative Extension Orange County, South Coast Research and Extension Center, Irvine, CA, 92618</wicri:regionArea><wicri:noRegion>92618</wicri:noRegion></affiliation></author><author><name sortKey="Oki, Lorence R" sort="Oki, Lorence R" uniqKey="Oki L" first="Lorence R" last="Oki">Lorence R. Oki</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Sciences, University of California, Davis, CA, 95616, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Sciences, University of California, Davis, CA, 95616</wicri:regionArea><wicri:noRegion>95616</wicri:noRegion></affiliation></author><author><name sortKey="Parke, Jennifer L" sort="Parke, Jennifer L" uniqKey="Parke J" first="Jennifer L" last="Parke">Jennifer L. Parke</name><affiliation wicri:level="1"><nlm:affiliation>Department of Crop and Soil Science, Oregon State University, Corvallis, OR, 97331, USA; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Crop and Soil Science, Oregon State University, Corvallis, OR, 97331, USA; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331</wicri:regionArea><wicri:noRegion>97331</wicri:noRegion></affiliation></author></analytic><series><title level="j">Water research</title><idno type="eISSN">1879-2448</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>California (MeSH)</term><term>Phytophthora (MeSH)</term><term>Pythium (MeSH)</term><term>Recycling (MeSH)</term><term>Water (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Californie (MeSH)</term><term>Eau (MeSH)</term><term>Phytophthora (MeSH)</term><term>Pythium (MeSH)</term><term>Recyclage (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Water</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>California</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Phytophthora</term><term>Pythium</term><term>Recycling</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Californie</term><term>Eau</term><term>Phytophthora</term><term>Pythium</term><term>Recyclage</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Recapture and recycling of irrigation water is often required to meet enormous water demands at horticultural nurseries. We tested four water types associated with a recycled irrigation system at a commercial container nursery in southern California for presence of oomycete plant pathogens from July 2015 to December 2017. These water types included: the main source of water originating from a reservoir, retention water from an on-site collection pond, irrigation water received by different growing areas within the nursery, and irrigation runoff captured in polyethylene sheet-lined runoff channels. The genera Phytophthora, Pythium, and Phytopythium together contributed more than 85% of the total oomycete population detected in the recycled irrigation system. The Phytophthora and Pythium genera were represented by member species from nine (1-4, 6-10) and eight (A, B, D-F, H-J) different sub-generic clades, respectively. Incoming water sourced from the reservoir was found to harbor known plant pathogens such as Phytophthora citricola-complex, P. capsici-cluster, P. tropicalis,P citrophthora-cluster, P. nemorosa-cluster, P. riparia, P. cryptogea-complex, P. parsiana-cluster, P. sp. nov. aff. kernoviae, Pythium dissotocum-complex, Py. oligandrum-cluster, Py. irregulare, and Phytopythium litorale. Runoff water showed the highest oomycete species richness and frequency of detection with both filtration and leaf baiting methods. In addition to plant pathogens, oomycete fish pathogens such as Aphanomyces laevis, Pythium chondricola-complex, Pythium flevoense-complex, and Saprolegnia diclina-complex were also detected in greater abundance in the recycled irrigation water. The oomycete species richness in the runoff water was correlated with several environmental parameters such as soil temperature. Greater oomycete richness in incoming water was associated with higher soil temperatures, whereas richness in runoff declines with increasing soil temperature, likely suggesting connections to weather-dependent nursery operations.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Automated" Owner="NLM"><PMID Version="1">32629181</PMID><DateCompleted><Year>2020</Year><Month>09</Month><Day>15</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>15</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1879-2448</ISSN><JournalIssue CitedMedium="Internet"><Volume>183</Volume><PubDate><Year>2020</Year><Month>Sep</Month><Day>15</Day></PubDate></JournalIssue><Title>Water research</Title><ISOAbbreviation>Water Res</ISOAbbreviation></Journal><ArticleTitle>The population of oomycetes in a recycled irrigation water system at a horticultural nursery in southern California.</ArticleTitle><Pagination><MedlinePgn>116050</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0043-1354(20)30587-X</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.watres.2020.116050</ELocationID><Abstract><AbstractText>Recapture and recycling of irrigation water is often required to meet enormous water demands at horticultural nurseries. We tested four water types associated with a recycled irrigation system at a commercial container nursery in southern California for presence of oomycete plant pathogens from July 2015 to December 2017. These water types included: the main source of water originating from a reservoir, retention water from an on-site collection pond, irrigation water received by different growing areas within the nursery, and irrigation runoff captured in polyethylene sheet-lined runoff channels. The genera Phytophthora, Pythium, and Phytopythium together contributed more than 85% of the total oomycete population detected in the recycled irrigation system. The Phytophthora and Pythium genera were represented by member species from nine (1-4, 6-10) and eight (A, B, D-F, H-J) different sub-generic clades, respectively. Incoming water sourced from the reservoir was found to harbor known plant pathogens such as Phytophthora citricola-complex, P. capsici-cluster, P. tropicalis,P citrophthora-cluster, P. nemorosa-cluster, P. riparia, P. cryptogea-complex, P. parsiana-cluster, P. sp. nov. aff. kernoviae, Pythium dissotocum-complex, Py. oligandrum-cluster, Py. irregulare, and Phytopythium litorale. Runoff water showed the highest oomycete species richness and frequency of detection with both filtration and leaf baiting methods. In addition to plant pathogens, oomycete fish pathogens such as Aphanomyces laevis, Pythium chondricola-complex, Pythium flevoense-complex, and Saprolegnia diclina-complex were also detected in greater abundance in the recycled irrigation water. The oomycete species richness in the runoff water was correlated with several environmental parameters such as soil temperature. Greater oomycete richness in incoming water was associated with higher soil temperatures, whereas richness in runoff declines with increasing soil temperature, likely suggesting connections to weather-dependent nursery operations.</AbstractText><CopyrightInformation>Copyright © 2020 Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Redekar</LastName><ForeName>Neelam R</ForeName><Initials>NR</Initials><AffiliationInfo><Affiliation>Department of Crop and Soil Science, Oregon State University, Corvallis, OR, 97331, USA. Electronic address: neelam.redekar@nih.gov.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bourret</LastName><ForeName>Tyler B</ForeName><Initials>TB</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of California, Davis, CA, 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Eberhart</LastName><ForeName>Joyce L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Department of Crop and Soil Science, Oregon State University, Corvallis, OR, 97331, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Johnson</LastName><ForeName>Grant E</ForeName><Initials>GE</Initials><AffiliationInfo><Affiliation>University of California Cooperative Extension Orange County, South Coast Research and Extension Center, Irvine, CA, 92618, USA; Department of Plant Sciences, University of California, Davis, CA, 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pitton</LastName><ForeName>Bruno J L</ForeName><Initials>BJL</Initials><AffiliationInfo><Affiliation>Department of Plant Sciences, University of California, Davis, CA, 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Haver</LastName><ForeName>Darren L</ForeName><Initials>DL</Initials><AffiliationInfo><Affiliation>University of California Cooperative Extension Orange County, South Coast Research and Extension Center, Irvine, CA, 92618, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oki</LastName><ForeName>Lorence R</ForeName><Initials>LR</Initials><AffiliationInfo><Affiliation>Department of Plant Sciences, University of California, Davis, CA, 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Parke</LastName><ForeName>Jennifer L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Department of Crop and Soil Science, Oregon State University, Corvallis, OR, 97331, USA; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>06</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Water Res</MedlineTA><NlmUniqueID>0105072</NlmUniqueID><ISSNLinking>0043-1354</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>059QF0KO0R</RegistryNumber><NameOfSubstance UI="D014867">Water</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002140" MajorTopicYN="N" Type="Geographic">California</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="Y">Phytophthora</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011775" MajorTopicYN="Y">Pythium</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059027" MajorTopicYN="N">Recycling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014867" MajorTopicYN="N">Water</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Lake Mathews reservoir</Keyword><Keyword MajorTopicYN="N">Metabarcoding</Keyword><Keyword MajorTopicYN="N">Phytophthora</Keyword><Keyword MajorTopicYN="N">Pythium, reclaimed water</Keyword><Keyword MajorTopicYN="N">Weather impacts</Keyword></KeywordList><CoiStatement>Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>02</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>06</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>06</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>7</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>9</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>7</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32629181</ArticleId><ArticleId IdType="pii">S0043-1354(20)30587-X</ArticleId><ArticleId IdType="doi">10.1016/j.watres.2020.116050</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><country name="États-Unis"><noRegion><name sortKey="Redekar, Neelam R" sort="Redekar, Neelam R" uniqKey="Redekar N" first="Neelam R" last="Redekar">Neelam R. Redekar</name></noRegion><name sortKey="Bourret, Tyler B" sort="Bourret, Tyler B" uniqKey="Bourret T" first="Tyler B" last="Bourret">Tyler B. Bourret</name><name sortKey="Eberhart, Joyce L" sort="Eberhart, Joyce L" uniqKey="Eberhart J" first="Joyce L" last="Eberhart">Joyce L. Eberhart</name><name sortKey="Haver, Darren L" sort="Haver, Darren L" uniqKey="Haver D" first="Darren L" last="Haver">Darren L. Haver</name><name sortKey="Johnson, Grant E" sort="Johnson, Grant E" uniqKey="Johnson G" first="Grant E" last="Johnson">Grant E. Johnson</name><name sortKey="Oki, Lorence R" sort="Oki, Lorence R" uniqKey="Oki L" first="Lorence R" last="Oki">Lorence R. Oki</name><name sortKey="Parke, Jennifer L" sort="Parke, Jennifer L" uniqKey="Parke J" first="Jennifer L" last="Parke">Jennifer L. Parke</name><name sortKey="Pitton, Bruno J L" sort="Pitton, Bruno J L" uniqKey="Pitton B" first="Bruno J L" last="Pitton">Bruno J L. 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